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< div class = "textblock" > < code > #include " < a class = "el" href = "DNACalib_8h_source.html" > dnacalib/DNACalib.h< / a > " < / code > < br / >
< code > #include < iostream> < / code > < br / >
< code > #include < vector> < / code > < br / >
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Include dependency graph for examples/CommandSequence.cpp:< / div >
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< tr class = "memitem:a3c04138a5bfe5d72780bb7e82a18e627" > < td class = "memItemLeft" align = "right" valign = "top" > int  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "examples_2CommandSequence_8cpp.html#a3c04138a5bfe5d72780bb7e82a18e627" > main< / a > (int argc, char **argv)< / td > < / tr >
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< tr class = "memitem:aef1bd6ad890a110b466cb0e8088507a2" > < td class = "memItemLeft" align = "right" valign = "top" > static const char *  < / td > < td class = "memItemRight" valign = "bottom" > < a class = "el" href = "examples_2CommandSequence_8cpp.html#aef1bd6ad890a110b466cb0e8088507a2" > usage< / a > = " Usage: commandsequence.exe < path-to-dna-file-to-edit> \n" < / td > < / tr >
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< h2 class = "memtitle" > < span class = "permalink" > < a href = "#a3c04138a5bfe5d72780bb7e82a18e627" > ◆ < / a > < / span > main()< / h2 >
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< td class = "memname" > int main < / td >
< td > (< / td >
< td class = "paramtype" > int  < / td >
< td class = "paramname" > < em > argc< / em > , < / td >
< / tr >
< tr >
< td class = "paramkey" > < / td >
< td > < / td >
< td class = "paramtype" > char **  < / td >
< td class = "paramname" > < em > argv< / em >   < / td >
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< td > )< / td >
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< div class = "fragment" > < div class = "line" > < span class = "lineno" > 10< / span > {< / div >
< div class = "line" > < span class = "lineno" > 11< / span > < span class = "keywordflow" > if< / span > (argc < 2) {< / div >
< div class = "line" > < span class = "lineno" > 12< / span > std::cout < < < span class = "stringliteral" > " Provide input dna file!" < / span > < < std::endl;< / div >
< div class = "line" > < span class = "lineno" > 13< / span > std::cout < < < a class = "code hl_variable" href = "examples_2CommandSequence_8cpp.html#aef1bd6ad890a110b466cb0e8088507a2" > usage< / a > < < std::endl;< / div >
< div class = "line" > < span class = "lineno" > 14< / span > < span class = "keywordflow" > return< / span > -1;< / div >
< div class = "line" > < span class = "lineno" > 15< / span > }< / div >
< div class = "line" > < span class = "lineno" > 16< / span > < / div >
< div class = "line" > < span class = "lineno" > 17< / span > < span class = "keyword" > const< / span > < span class = "keywordtype" > char< / span > * inputDNA = argv[1];< / div >
< div class = "line" > < span class = "lineno" > 18< / span > < span class = "keyword" > auto< / span > inStream = dnac::makeScoped< dnac::FileStream> (inputDNA,< / div >
< div class = "line" > < span class = "lineno" > 19< / span > dnac::FileStream::AccessMode::Read,< / div >
< div class = "line" > < span class = "lineno" > 20< / span > dnac::FileStream::OpenMode::Binary);< / div >
< div class = "line" > < span class = "lineno" > 21< / span > < span class = "keyword" > auto< / span > reader = dnac::makeScoped< dnac::BinaryStreamReader> (inStream.get());< / div >
< div class = "line" > < span class = "lineno" > 22< / span > reader-> read();< / div >
< div class = "line" > < span class = "lineno" > 23< / span > < / div >
< div class = "line" > < span class = "lineno" > 24< / span > < span class = "keywordflow" > if< / span > (!< a class = "code hl_function" href = "classsc_1_1Status.html#a4569e3c01410719eaa1a95d39d59763f" > dnac::Status::isOk< / a > ()) {< / div >
< div class = "line" > < span class = "lineno" > 25< / span > std::cout < < < span class = "stringliteral" > " Could not read input DNA file!\n" < / span > ;< / div >
< div class = "line" > < span class = "lineno" > 26< / span > < span class = "keywordflow" > return< / span > -1;< / div >
< div class = "line" > < span class = "lineno" > 27< / span > }< / div >
< div class = "line" > < span class = "lineno" > 28< / span > < / div >
< div class = "line" > < span class = "lineno" > 29< / span > < span class = "keyword" > auto< / span > dnaReader = dnac::makeScoped< dnac::DNACalibDNAReader> (reader.get());< / div >
< div class = "line" > < span class = "lineno" > 30< / span > < / div >
< div class = "line" > < span class = "lineno" > 31< / span > < span class = "comment" > // Create command sequence instance< / span > < / div >
< div class = "line" > < span class = "lineno" > 32< / span > < a class = "code hl_class" href = "classdnac_1_1CommandSequence.html" > dnac::CommandSequence< / a > cmdSeq;< / div >
< div class = "line" > < span class = "lineno" > 33< / span > < / div >
< div class = "line" > < span class = "lineno" > 34< / span > < span class = "comment" > // Prepare a bunch of commands< / span > < / div >
< div class = "line" > < span class = "lineno" > 35< / span > std::vector< dnac::Vector3> positions;< / div >
< div class = "line" > < span class = "lineno" > 36< / span > std::vector< float> masks;< / div >
< div class = "line" > < span class = "lineno" > 37< / span > < a class = "code hl_class" href = "classdnac_1_1SetVertexPositionsCommand.html" > dnac::SetVertexPositionsCommand< / a > setMeshAPos{2, < a class = "code hl_class" href = "classtrust_1_1ArrayView.html" > dnac::ConstArrayView< dnac::Vector3> < / a > {positions},< / div >
< div class = "line" > < span class = "lineno" > 38< / span > < a class = "code hl_class" href = "classtrust_1_1ArrayView.html" > dnac::ConstArrayView< float> < / a > {masks},< / div >
< div class = "line" > < span class = "lineno" > 39< / span > < a class = "code hl_enumvalue" href = "namespacednac.html#a0839ffb81a5969050a4b31009a3ad18fad53238014015da17926bca398282211f" > dnac::VectorOperation::Interpolate< / a > };< / div >
< div class = "line" > < span class = "lineno" > 40< / span > < a class = "code hl_class" href = "classdnac_1_1RenameJointCommand.html" > dnac::RenameJointCommand< / a > renameJointA(< span class = "stringliteral" > " clavicle_l" < / span > , < span class = "stringliteral" > " cubicle_l" < / span > );< / div >
< div class = "line" > < span class = "lineno" > 41< / span > < a class = "code hl_class" href = "classdnac_1_1RenameJointCommand.html" > dnac::RenameJointCommand< / a > renameJointB(10, < span class = "stringliteral" > " upperarm_corrosiveRoot_l" < / span > );< / div >
< div class = "line" > < span class = "lineno" > 42< / span > < / div >
< div class = "line" > < span class = "lineno" > 43< / span > < span class = "comment" > // Add commands to the command sequence< / span > < / div >
< div class = "line" > < span class = "lineno" > 44< / span > cmdSeq.< a class = "code hl_function" href = "classdnac_1_1CommandSequence.html#a7e2bf1058ffc1a08d79b646ccce97417" > add< / a > (& setMeshAPos, & renameJointA);< / div >
< div class = "line" > < span class = "lineno" > 45< / span > cmdSeq.< a class = "code hl_function" href = "classdnac_1_1CommandSequence.html#a7e2bf1058ffc1a08d79b646ccce97417" > add< / a > (& renameJointB);< / div >
< div class = "line" > < span class = "lineno" > 46< / span > < / div >
< div class = "line" > < span class = "lineno" > 47< / span > < span class = "comment" > // Execute command sequence< / span > < / div >
< div class = "line" > < span class = "lineno" > 48< / span > cmdSeq.< a class = "code hl_function" href = "classdnac_1_1CommandSequence.html#a76e18e4c9004bc24f6ede391788f1a1f" > run< / a > (dnaReader.get());< / div >
< div class = "line" > < span class = "lineno" > 49< / span > < / div >
< div class = "line" > < span class = "lineno" > 50< / span > < span class = "comment" > // Reconfigure individual commands that are already in the command sequence< / span > < / div >
< div class = "line" > < span class = "lineno" > 51< / span > renameJointB.setName(< span class = "stringliteral" > " FACIAL_L_12IPV_NeckBackB2" < / span > , < span class = "stringliteral" > " FACIAL_L_12IPTV_NickelBackB52" < / span > );< / div >
< div class = "line" > < span class = "lineno" > 52< / span > < / div >
< div class = "line" > < span class = "lineno" > 53< / span > < span class = "comment" > // Modify command sequence (turn an unconditional command into a conditional command)< / span > < / div >
< div class = "line" > < span class = "lineno" > 54< / span > cmdSeq.< a class = "code hl_function" href = "classdnac_1_1CommandSequence.html#ab2cda7bc8e1668d53e4dba56ae1039c4" > remove< / a > (& renameJointA);< / div >
< div class = "line" > < span class = "lineno" > 55< / span > < span class = "keyword" > auto< / span > guardedRenameJointA =< / div >
< div class = "line" > < span class = "lineno" > 56< / span > < a class = "code hl_function" href = "namespacednac.html#aa44501c4141be5abbb3ef7633abc06e6" > dnac::makeConditional< / a > (& renameJointA, [](< a class = "code hl_class" href = "classdnac_1_1RenameJointCommand.html" > dnac::RenameJointCommand< / a > * command, < a class = "code hl_class" href = "classdnac_1_1DNACalibDNAReader.html" > dnac::DNACalibDNAReader< / a > * output) {< / div >
< div class = "line" > < span class = "lineno" > 57< / span > < span class = "keywordflow" > return< / span > (output-> < a class = "code hl_function" href = "classdna_1_1DefinitionReader.html#acb077a6f51c59fcfc8a2e6dd2de6cf2e" > getJointCount< / a > () > 6);< / div >
< div class = "line" > < span class = "lineno" > 58< / span > });< / div >
< div class = "line" > < span class = "lineno" > 59< / span > cmdSeq.< a class = "code hl_function" href = "classdnac_1_1CommandSequence.html#a7e2bf1058ffc1a08d79b646ccce97417" > add< / a > (& guardedRenameJointA);< / div >
< div class = "line" > < span class = "lineno" > 60< / span > < / div >
< div class = "line" > < span class = "lineno" > 61< / span > < span class = "comment" > // Execute modified command sequence< / span > < / div >
< div class = "line" > < span class = "lineno" > 62< / span > cmdSeq.< a class = "code hl_function" href = "classdnac_1_1CommandSequence.html#a76e18e4c9004bc24f6ede391788f1a1f" > run< / a > (dnaReader.get());< / div >
< div class = "line" > < span class = "lineno" > 63< / span > < / div >
< div class = "line" > < span class = "lineno" > 64< / span > < span class = "keywordflow" > return< / span > 0;< / div >
< div class = "line" > < span class = "lineno" > 65< / span > }< / div >
< div class = "ttc" id = "aclassdna_1_1DefinitionReader_html_acb077a6f51c59fcfc8a2e6dd2de6cf2e" > < div class = "ttname" > < a href = "classdna_1_1DefinitionReader.html#acb077a6f51c59fcfc8a2e6dd2de6cf2e" > dna::DefinitionReader::getJointCount< / a > < / div > < div class = "ttdeci" > virtual std::uint16_t getJointCount() const =0< / div > < / div >
< div class = "ttc" id = "aclassdnac_1_1CommandSequence_html" > < div class = "ttname" > < a href = "classdnac_1_1CommandSequence.html" > dnac::CommandSequence< / a > < / div > < div class = "ttdoc" > CommandSequence is used to run a sequence of commands on the same DNA.< / div > < div class = "ttdef" > < b > Definition:< / b > CommandSequence.h:20< / div > < / div >
< div class = "ttc" id = "aclassdnac_1_1CommandSequence_html_a76e18e4c9004bc24f6ede391788f1a1f" > < div class = "ttname" > < a href = "classdnac_1_1CommandSequence.html#a76e18e4c9004bc24f6ede391788f1a1f" > dnac::CommandSequence::run< / a > < / div > < div class = "ttdeci" > DNACAPI void run(DNACalibDNAReader *output) override< / div > < div class = "ttdef" > < b > Definition:< / b > src/dnacalib/commands/CommandSequence.cpp:57< / div > < / div >
< div class = "ttc" id = "aclassdnac_1_1CommandSequence_html_a7e2bf1058ffc1a08d79b646ccce97417" > < div class = "ttname" > < a href = "classdnac_1_1CommandSequence.html#a7e2bf1058ffc1a08d79b646ccce97417" > dnac::CommandSequence::add< / a > < / div > < div class = "ttdeci" > DNACAPI void add(Command *command)< / div > < div class = "ttdoc" > Method for adding a command to a sequence of commands to run.< / div > < div class = "ttdef" > < b > Definition:< / b > src/dnacalib/commands/CommandSequence.cpp:61< / div > < / div >
< div class = "ttc" id = "aclassdnac_1_1CommandSequence_html_ab2cda7bc8e1668d53e4dba56ae1039c4" > < div class = "ttname" > < a href = "classdnac_1_1CommandSequence.html#ab2cda7bc8e1668d53e4dba56ae1039c4" > dnac::CommandSequence::remove< / a > < / div > < div class = "ttdeci" > DNACAPI void remove(Command *command)< / div > < div class = "ttdoc" > Method for removing a command from the sequence of commands to run.< / div > < div class = "ttdef" > < b > Definition:< / b > src/dnacalib/commands/CommandSequence.cpp:71< / div > < / div >
< div class = "ttc" id = "aclassdnac_1_1DNACalibDNAReader_html" > < div class = "ttname" > < a href = "classdnac_1_1DNACalibDNAReader.html" > dnac::DNACalibDNAReader< / a > < / div > < div class = "ttdef" > < b > Definition:< / b > DNACalibDNAReader.h:12< / div > < / div >
< div class = "ttc" id = "aclassdnac_1_1RenameJointCommand_html" > < div class = "ttname" > < a href = "classdnac_1_1RenameJointCommand.html" > dnac::RenameJointCommand< / a > < / div > < div class = "ttdoc" > RenameJointCommand is used to rename a joint.< / div > < div class = "ttdef" > < b > Definition:< / b > RenameJointCommand.h:18< / div > < / div >
< div class = "ttc" id = "aclassdnac_1_1SetVertexPositionsCommand_html" > < div class = "ttname" > < a href = "classdnac_1_1SetVertexPositionsCommand.html" > dnac::SetVertexPositionsCommand< / a > < / div > < div class = "ttdoc" > SetVertexPositionsCommand is used to change vertex positions values.< / div > < div class = "ttdef" > < b > Definition:< / b > SetVertexPositionsCommand.h:19< / div > < / div >
< div class = "ttc" id = "aclasssc_1_1Status_html_a4569e3c01410719eaa1a95d39d59763f" > < div class = "ttname" > < a href = "classsc_1_1Status.html#a4569e3c01410719eaa1a95d39d59763f" > sc::Status::isOk< / a > < / div > < div class = "ttdeci" > static bool isOk()< / div > < div class = "ttdef" > < b > Definition:< / b > Status.cpp:13< / div > < / div >
< div class = "ttc" id = "aclasstrust_1_1ArrayView_html" > < div class = "ttname" > < a href = "classtrust_1_1ArrayView.html" > trust::ArrayView< / a > < / div > < div class = "ttdoc" > A view over a continuous sequence of objects.< / div > < div class = "ttdef" > < b > Definition:< / b > ArrayView.h:55< / div > < / div >
< div class = "ttc" id = "aexamples_2CommandSequence_8cpp_html_aef1bd6ad890a110b466cb0e8088507a2" > < div class = "ttname" > < a href = "examples_2CommandSequence_8cpp.html#aef1bd6ad890a110b466cb0e8088507a2" > usage< / a > < / div > < div class = "ttdeci" > static const char * usage< / div > < div class = "ttdef" > < b > Definition:< / b > examples/CommandSequence.cpp:8< / div > < / div >
< div class = "ttc" id = "anamespacednac_html_a0839ffb81a5969050a4b31009a3ad18fad53238014015da17926bca398282211f" > < div class = "ttname" > < a href = "namespacednac.html#a0839ffb81a5969050a4b31009a3ad18fad53238014015da17926bca398282211f" > dnac::VectorOperation::Interpolate< / a > < / div > < div class = "ttdeci" > @ Interpolate< / div > < / div >
< div class = "ttc" id = "anamespacednac_html_aa44501c4141be5abbb3ef7633abc06e6" > < div class = "ttname" > < a href = "namespacednac.html#aa44501c4141be5abbb3ef7633abc06e6" > dnac::makeConditional< / a > < / div > < div class = "ttdeci" > ConditionalCommand< TCommand, TCondition > makeConditional(TCommand *command, TCondition condition)< / div > < div class = "ttdef" > < b > Definition:< / b > ConditionalCommand.h:70< / div > < / div >
< / div > <!-- fragment -->
< p class = "reference" > References < a class = "el" href = "classdnac_1_1CommandSequence.html#a7e2bf1058ffc1a08d79b646ccce97417" > dnac::CommandSequence::add()< / a > , < a class = "el" href = "classdna_1_1DefinitionReader.html#acb077a6f51c59fcfc8a2e6dd2de6cf2e" > dna::DefinitionReader::getJointCount()< / a > , < a class = "el" href = "namespacednac.html#a0839ffb81a5969050a4b31009a3ad18fad53238014015da17926bca398282211f" > dnac::Interpolate< / a > , < a class = "el" href = "classsc_1_1Status.html#a4569e3c01410719eaa1a95d39d59763f" > sc::Status::isOk()< / a > , < a class = "el" href = "namespacednac.html#aa44501c4141be5abbb3ef7633abc06e6" > dnac::makeConditional()< / a > , < a class = "el" href = "classdnac_1_1CommandSequence.html#ab2cda7bc8e1668d53e4dba56ae1039c4" > dnac::CommandSequence::remove()< / a > , < a class = "el" href = "classdnac_1_1CommandSequence.html#a76e18e4c9004bc24f6ede391788f1a1f" > dnac::CommandSequence::run()< / a > , < a class = "el" href = "classdnac_1_1RenameJointCommand.html#a212e3d7ab9c143b92c039e4bebe28e44" > dnac::RenameJointCommand::setName()< / a > , and < a class = "el" href = "examples_2CommandSequence_8cpp.html#aef1bd6ad890a110b466cb0e8088507a2" > usage< / a > .< / p >
< / div >
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< h2 class = "groupheader" > Variable Documentation< / h2 >
< a id = "aef1bd6ad890a110b466cb0e8088507a2" name = "aef1bd6ad890a110b466cb0e8088507a2" > < / a >
< h2 class = "memtitle" > < span class = "permalink" > < a href = "#aef1bd6ad890a110b466cb0e8088507a2" > ◆ < / a > < / span > usage< / h2 >
< div class = "memitem" >
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< table class = "mlabels" >
< tr >
< td class = "mlabels-left" >
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< td class = "memname" > const char* usage = " Usage: commandsequence.exe < path-to-dna-file-to-edit> \n" < / td >
< / tr >
< / table >
< / td >
< td class = "mlabels-right" >
< span class = "mlabels" > < span class = "mlabel" > static< / span > < / span > < / td >
< / tr >
< / table >
< / div > < div class = "memdoc" >
< p class = "reference" > Referenced by < a class = "el" href = "examples_2CommandSequence_8cpp.html#a3c04138a5bfe5d72780bb7e82a18e627" > main()< / a > .< / p >
< / div >
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Generated by  < a href = "https://www.doxygen.org/index.html" > < img class = "footer" src = "doxygen.svg" width = "104" height = "31" alt = "doxygen" / > < / a > 1.9.4
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