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<div class="textblock"><code>#include &quot;<a class="el" href="DNACalib_8h_source.html">dnacalib/DNACalib.h</a>&quot;</code><br />
<code>#include &lt;iostream&gt;</code><br />
<code>#include &lt;vector&gt;</code><br />
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Functions</h2></td></tr>
<tr class="memitem:a3c04138a5bfe5d72780bb7e82a18e627"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="examples_2CommandSequence_8cpp.html#a3c04138a5bfe5d72780bb7e82a18e627">main</a> (int argc, char **argv)</td></tr>
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Variables</h2></td></tr>
<tr class="memitem:aef1bd6ad890a110b466cb0e8088507a2"><td class="memItemLeft" align="right" valign="top">static const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="examples_2CommandSequence_8cpp.html#aef1bd6ad890a110b466cb0e8088507a2">usage</a> = &quot;Usage: commandsequence.exe &lt;path-to-dna-file-to-edit&gt;\n&quot;</td></tr>
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<h2 class="groupheader">Function Documentation</h2>
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<h2 class="memtitle"><span class="permalink"><a href="#a3c04138a5bfe5d72780bb7e82a18e627">&#9670;&nbsp;</a></span>main()</h2>
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<td class="memname">int main </td>
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<td class="paramtype">int&#160;</td>
<td class="paramname"><em>argc</em>, </td>
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<td class="paramname"><em>argv</em>&#160;</td>
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<div class="fragment"><div class="line"><span class="lineno"> 10</span> {</div>
<div class="line"><span class="lineno"> 11</span> <span class="keywordflow">if</span> (argc &lt; 2) {</div>
<div class="line"><span class="lineno"> 12</span> std::cout &lt;&lt; <span class="stringliteral">&quot;Provide input dna file!&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"><span class="lineno"> 13</span> std::cout &lt;&lt; <a class="code hl_variable" href="examples_2CommandSequence_8cpp.html#aef1bd6ad890a110b466cb0e8088507a2">usage</a> &lt;&lt; std::endl;</div>
<div class="line"><span class="lineno"> 14</span> <span class="keywordflow">return</span> -1;</div>
<div class="line"><span class="lineno"> 15</span> }</div>
<div class="line"><span class="lineno"> 16</span> </div>
<div class="line"><span class="lineno"> 17</span> <span class="keyword">const</span> <span class="keywordtype">char</span>* inputDNA = argv[1];</div>
<div class="line"><span class="lineno"> 18</span> <span class="keyword">auto</span> inStream = dnac::makeScoped&lt;dnac::FileStream&gt;(inputDNA,</div>
<div class="line"><span class="lineno"> 19</span> dnac::FileStream::AccessMode::Read,</div>
<div class="line"><span class="lineno"> 20</span> dnac::FileStream::OpenMode::Binary);</div>
<div class="line"><span class="lineno"> 21</span> <span class="keyword">auto</span> reader = dnac::makeScoped&lt;dnac::BinaryStreamReader&gt;(inStream.get());</div>
<div class="line"><span class="lineno"> 22</span> reader-&gt;read();</div>
<div class="line"><span class="lineno"> 23</span> </div>
<div class="line"><span class="lineno"> 24</span> <span class="keywordflow">if</span> (!<a class="code hl_function" href="classsc_1_1Status.html#a4569e3c01410719eaa1a95d39d59763f">dnac::Status::isOk</a>()) {</div>
<div class="line"><span class="lineno"> 25</span> std::cout &lt;&lt; <span class="stringliteral">&quot;Could not read input DNA file!\n&quot;</span>;</div>
<div class="line"><span class="lineno"> 26</span> <span class="keywordflow">return</span> -1;</div>
<div class="line"><span class="lineno"> 27</span> }</div>
<div class="line"><span class="lineno"> 28</span> </div>
<div class="line"><span class="lineno"> 29</span> <span class="keyword">auto</span> dnaReader = dnac::makeScoped&lt;dnac::DNACalibDNAReader&gt;(reader.get());</div>
<div class="line"><span class="lineno"> 30</span> </div>
<div class="line"><span class="lineno"> 31</span> <span class="comment">// Create command sequence instance</span></div>
<div class="line"><span class="lineno"> 32</span> <a class="code hl_class" href="classdnac_1_1CommandSequence.html">dnac::CommandSequence</a> cmdSeq;</div>
<div class="line"><span class="lineno"> 33</span> </div>
<div class="line"><span class="lineno"> 34</span> <span class="comment">// Prepare a bunch of commands</span></div>
<div class="line"><span class="lineno"> 35</span> std::vector&lt;dnac::Vector3&gt; positions;</div>
<div class="line"><span class="lineno"> 36</span> std::vector&lt;float&gt; masks;</div>
<div class="line"><span class="lineno"> 37</span> <a class="code hl_class" href="classdnac_1_1SetVertexPositionsCommand.html">dnac::SetVertexPositionsCommand</a> setMeshAPos{2, <a class="code hl_class" href="classtrust_1_1ArrayView.html">dnac::ConstArrayView&lt;dnac::Vector3&gt;</a>{positions},</div>
<div class="line"><span class="lineno"> 38</span> <a class="code hl_class" href="classtrust_1_1ArrayView.html">dnac::ConstArrayView&lt;float&gt;</a>{masks},</div>
<div class="line"><span class="lineno"> 39</span> <a class="code hl_enumvalue" href="namespacednac.html#a0839ffb81a5969050a4b31009a3ad18fad53238014015da17926bca398282211f">dnac::VectorOperation::Interpolate</a>};</div>
<div class="line"><span class="lineno"> 40</span> <a class="code hl_class" href="classdnac_1_1RenameJointCommand.html">dnac::RenameJointCommand</a> renameJointA(<span class="stringliteral">&quot;clavicle_l&quot;</span>, <span class="stringliteral">&quot;cubicle_l&quot;</span>);</div>
<div class="line"><span class="lineno"> 41</span> <a class="code hl_class" href="classdnac_1_1RenameJointCommand.html">dnac::RenameJointCommand</a> renameJointB(10, <span class="stringliteral">&quot;upperarm_corrosiveRoot_l&quot;</span>);</div>
<div class="line"><span class="lineno"> 42</span> </div>
<div class="line"><span class="lineno"> 43</span> <span class="comment">// Add commands to the command sequence</span></div>
<div class="line"><span class="lineno"> 44</span> cmdSeq.<a class="code hl_function" href="classdnac_1_1CommandSequence.html#a7e2bf1058ffc1a08d79b646ccce97417">add</a>(&amp;setMeshAPos, &amp;renameJointA);</div>
<div class="line"><span class="lineno"> 45</span> cmdSeq.<a class="code hl_function" href="classdnac_1_1CommandSequence.html#a7e2bf1058ffc1a08d79b646ccce97417">add</a>(&amp;renameJointB);</div>
<div class="line"><span class="lineno"> 46</span> </div>
<div class="line"><span class="lineno"> 47</span> <span class="comment">// Execute command sequence</span></div>
<div class="line"><span class="lineno"> 48</span> cmdSeq.<a class="code hl_function" href="classdnac_1_1CommandSequence.html#a76e18e4c9004bc24f6ede391788f1a1f">run</a>(dnaReader.get());</div>
<div class="line"><span class="lineno"> 49</span> </div>
<div class="line"><span class="lineno"> 50</span> <span class="comment">// Reconfigure individual commands that are already in the command sequence</span></div>
<div class="line"><span class="lineno"> 51</span> renameJointB.setName(<span class="stringliteral">&quot;FACIAL_L_12IPV_NeckBackB2&quot;</span>, <span class="stringliteral">&quot;FACIAL_L_12IPTV_NickelBackB52&quot;</span>);</div>
<div class="line"><span class="lineno"> 52</span> </div>
<div class="line"><span class="lineno"> 53</span> <span class="comment">// Modify command sequence (turn an unconditional command into a conditional command)</span></div>
<div class="line"><span class="lineno"> 54</span> cmdSeq.<a class="code hl_function" href="classdnac_1_1CommandSequence.html#ab2cda7bc8e1668d53e4dba56ae1039c4">remove</a>(&amp;renameJointA);</div>
<div class="line"><span class="lineno"> 55</span> <span class="keyword">auto</span> guardedRenameJointA =</div>
<div class="line"><span class="lineno"> 56</span> <a class="code hl_function" href="namespacednac.html#aa44501c4141be5abbb3ef7633abc06e6">dnac::makeConditional</a>(&amp;renameJointA, [](<a class="code hl_class" href="classdnac_1_1RenameJointCommand.html">dnac::RenameJointCommand</a>* command, <a class="code hl_class" href="classdnac_1_1DNACalibDNAReader.html">dnac::DNACalibDNAReader</a>* output) {</div>
<div class="line"><span class="lineno"> 57</span> <span class="keywordflow">return</span> (output-&gt;<a class="code hl_function" href="classdna_1_1DefinitionReader.html#acb077a6f51c59fcfc8a2e6dd2de6cf2e">getJointCount</a>() &gt; 6);</div>
<div class="line"><span class="lineno"> 58</span> });</div>
<div class="line"><span class="lineno"> 59</span> cmdSeq.<a class="code hl_function" href="classdnac_1_1CommandSequence.html#a7e2bf1058ffc1a08d79b646ccce97417">add</a>(&amp;guardedRenameJointA);</div>
<div class="line"><span class="lineno"> 60</span> </div>
<div class="line"><span class="lineno"> 61</span> <span class="comment">// Execute modified command sequence</span></div>
<div class="line"><span class="lineno"> 62</span> cmdSeq.<a class="code hl_function" href="classdnac_1_1CommandSequence.html#a76e18e4c9004bc24f6ede391788f1a1f">run</a>(dnaReader.get());</div>
<div class="line"><span class="lineno"> 63</span> </div>
<div class="line"><span class="lineno"> 64</span> <span class="keywordflow">return</span> 0;</div>
<div class="line"><span class="lineno"> 65</span>}</div>
<div class="ttc" id="aclassdna_1_1DefinitionReader_html_acb077a6f51c59fcfc8a2e6dd2de6cf2e"><div class="ttname"><a href="classdna_1_1DefinitionReader.html#acb077a6f51c59fcfc8a2e6dd2de6cf2e">dna::DefinitionReader::getJointCount</a></div><div class="ttdeci">virtual std::uint16_t getJointCount() const =0</div></div>
<div class="ttc" id="aclassdnac_1_1CommandSequence_html"><div class="ttname"><a href="classdnac_1_1CommandSequence.html">dnac::CommandSequence</a></div><div class="ttdoc">CommandSequence is used to run a sequence of commands on the same DNA.</div><div class="ttdef"><b>Definition:</b> CommandSequence.h:20</div></div>
<div class="ttc" id="aclassdnac_1_1CommandSequence_html_a76e18e4c9004bc24f6ede391788f1a1f"><div class="ttname"><a href="classdnac_1_1CommandSequence.html#a76e18e4c9004bc24f6ede391788f1a1f">dnac::CommandSequence::run</a></div><div class="ttdeci">DNACAPI void run(DNACalibDNAReader *output) override</div><div class="ttdef"><b>Definition:</b> src/dnacalib/commands/CommandSequence.cpp:57</div></div>
<div class="ttc" id="aclassdnac_1_1CommandSequence_html_a7e2bf1058ffc1a08d79b646ccce97417"><div class="ttname"><a href="classdnac_1_1CommandSequence.html#a7e2bf1058ffc1a08d79b646ccce97417">dnac::CommandSequence::add</a></div><div class="ttdeci">DNACAPI void add(Command *command)</div><div class="ttdoc">Method for adding a command to a sequence of commands to run.</div><div class="ttdef"><b>Definition:</b> src/dnacalib/commands/CommandSequence.cpp:61</div></div>
<div class="ttc" id="aclassdnac_1_1CommandSequence_html_ab2cda7bc8e1668d53e4dba56ae1039c4"><div class="ttname"><a href="classdnac_1_1CommandSequence.html#ab2cda7bc8e1668d53e4dba56ae1039c4">dnac::CommandSequence::remove</a></div><div class="ttdeci">DNACAPI void remove(Command *command)</div><div class="ttdoc">Method for removing a command from the sequence of commands to run.</div><div class="ttdef"><b>Definition:</b> src/dnacalib/commands/CommandSequence.cpp:71</div></div>
<div class="ttc" id="aclassdnac_1_1DNACalibDNAReader_html"><div class="ttname"><a href="classdnac_1_1DNACalibDNAReader.html">dnac::DNACalibDNAReader</a></div><div class="ttdef"><b>Definition:</b> DNACalibDNAReader.h:12</div></div>
<div class="ttc" id="aclassdnac_1_1RenameJointCommand_html"><div class="ttname"><a href="classdnac_1_1RenameJointCommand.html">dnac::RenameJointCommand</a></div><div class="ttdoc">RenameJointCommand is used to rename a joint.</div><div class="ttdef"><b>Definition:</b> RenameJointCommand.h:18</div></div>
<div class="ttc" id="aclassdnac_1_1SetVertexPositionsCommand_html"><div class="ttname"><a href="classdnac_1_1SetVertexPositionsCommand.html">dnac::SetVertexPositionsCommand</a></div><div class="ttdoc">SetVertexPositionsCommand is used to change vertex positions values.</div><div class="ttdef"><b>Definition:</b> SetVertexPositionsCommand.h:19</div></div>
<div class="ttc" id="aclasssc_1_1Status_html_a4569e3c01410719eaa1a95d39d59763f"><div class="ttname"><a href="classsc_1_1Status.html#a4569e3c01410719eaa1a95d39d59763f">sc::Status::isOk</a></div><div class="ttdeci">static bool isOk()</div><div class="ttdef"><b>Definition:</b> Status.cpp:13</div></div>
<div class="ttc" id="aclasstrust_1_1ArrayView_html"><div class="ttname"><a href="classtrust_1_1ArrayView.html">trust::ArrayView</a></div><div class="ttdoc">A view over a continuous sequence of objects.</div><div class="ttdef"><b>Definition:</b> ArrayView.h:55</div></div>
<div class="ttc" id="aexamples_2CommandSequence_8cpp_html_aef1bd6ad890a110b466cb0e8088507a2"><div class="ttname"><a href="examples_2CommandSequence_8cpp.html#aef1bd6ad890a110b466cb0e8088507a2">usage</a></div><div class="ttdeci">static const char * usage</div><div class="ttdef"><b>Definition:</b> examples/CommandSequence.cpp:8</div></div>
<div class="ttc" id="anamespacednac_html_a0839ffb81a5969050a4b31009a3ad18fad53238014015da17926bca398282211f"><div class="ttname"><a href="namespacednac.html#a0839ffb81a5969050a4b31009a3ad18fad53238014015da17926bca398282211f">dnac::VectorOperation::Interpolate</a></div><div class="ttdeci">@ Interpolate</div></div>
<div class="ttc" id="anamespacednac_html_aa44501c4141be5abbb3ef7633abc06e6"><div class="ttname"><a href="namespacednac.html#aa44501c4141be5abbb3ef7633abc06e6">dnac::makeConditional</a></div><div class="ttdeci">ConditionalCommand&lt; TCommand, TCondition &gt; makeConditional(TCommand *command, TCondition condition)</div><div class="ttdef"><b>Definition:</b> ConditionalCommand.h:70</div></div>
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<p class="reference">References <a class="el" href="classdnac_1_1CommandSequence.html#a7e2bf1058ffc1a08d79b646ccce97417">dnac::CommandSequence::add()</a>, <a class="el" href="classdna_1_1DefinitionReader.html#acb077a6f51c59fcfc8a2e6dd2de6cf2e">dna::DefinitionReader::getJointCount()</a>, <a class="el" href="namespacednac.html#a0839ffb81a5969050a4b31009a3ad18fad53238014015da17926bca398282211f">dnac::Interpolate</a>, <a class="el" href="classsc_1_1Status.html#a4569e3c01410719eaa1a95d39d59763f">sc::Status::isOk()</a>, <a class="el" href="namespacednac.html#aa44501c4141be5abbb3ef7633abc06e6">dnac::makeConditional()</a>, <a class="el" href="classdnac_1_1CommandSequence.html#ab2cda7bc8e1668d53e4dba56ae1039c4">dnac::CommandSequence::remove()</a>, <a class="el" href="classdnac_1_1CommandSequence.html#a76e18e4c9004bc24f6ede391788f1a1f">dnac::CommandSequence::run()</a>, <a class="el" href="classdnac_1_1RenameJointCommand.html#a212e3d7ab9c143b92c039e4bebe28e44">dnac::RenameJointCommand::setName()</a>, and <a class="el" href="examples_2CommandSequence_8cpp.html#aef1bd6ad890a110b466cb0e8088507a2">usage</a>.</p>
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<h2 class="groupheader">Variable Documentation</h2>
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<h2 class="memtitle"><span class="permalink"><a href="#aef1bd6ad890a110b466cb0e8088507a2">&#9670;&nbsp;</a></span>usage</h2>
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<td class="memname">const char* usage = &quot;Usage: commandsequence.exe &lt;path-to-dna-file-to-edit&gt;\n&quot;</td>
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<p class="reference">Referenced by <a class="el" href="examples_2CommandSequence_8cpp.html#a3c04138a5bfe5d72780bb7e82a18e627">main()</a>.</p>
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