Metahuman_DNA_Calibration/examples/dnacalib_lod_demo.py

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2022-10-31 18:15:50 +08:00
"""
This example demonstrates creation of a new DNA from an existing one by extracting specific lods.
- usage in command line:
- call without arguments:
python dnacalib_lod_demo.py
mayapy dnacalib_lod_demo.py
Expected: Script will generate Ada_with_lods_1_and_3.dna in OUTPUT_DIR, from original Ada.dna.
NOTE: If OUTPUT_DIR does not exist, it will be created.
- usage in Maya:
1. copy whole content of this file to Maya Script Editor
2. change value of ROOT_DIR to absolute path of dna_calibration, e.g. `c:/dna_calibration` in Windows or `/home/user/dna_calibration`. Important:
Use `/` (forward slash), because Maya uses forward slashes in path.
Expected: Script will generate Ada_with_lods_1_and_3.dna in OUTPUT_DIR, from original Ada.dna.
NOTE: If OUTPUT_DIR does not exist, it will be created.
- customization:
- change value of DNA to Taro, or name of file which is copied to /data/dna
- change value of LODS to list of lods needed to be extracted
NOTE: If running on Linux, please make sure to append the LD_LIBRARY_PATH with absolute path to the lib/linux directory before running the example:
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:<path-to-lib-linux-dir>
"""
from os import environ, makedirs
from os import path as ospath
from sys import path as syspath
from sys import platform
# if you use Maya, use absolute path
ROOT_DIR = f"{ospath.dirname(ospath.abspath(__file__))}/..".replace("\\", "/")
OUTPUT_DIR = f"{ROOT_DIR}/output"
ROOT_LIB_DIR = f"{ROOT_DIR}/lib"
if platform == "win32":
LIB_DIR = f"{ROOT_LIB_DIR}/windows"
elif platform == "linux":
LIB_DIR = f"{ROOT_LIB_DIR}/linux"
else:
raise OSError(
"OS not supported, please compile dependencies and add value to LIB_DIR"
)
# Add bin directory to maya plugin path
if "MAYA_PLUG_IN_PATH" in environ:
separator = ":" if platform == "linux" else ";"
environ["MAYA_PLUG_IN_PATH"] = separator.join([environ["MAYA_PLUG_IN_PATH"], LIB_DIR])
else:
environ["MAYA_PLUG_IN_PATH"] = LIB_DIR
# Adds directories to path
syspath.insert(0, ROOT_DIR)
syspath.insert(0, LIB_DIR)
import dnacalib as dnacalib
import dna
# Sets DNA file path
DNA = f"{ROOT_DIR}/data/dna/Ada.dna"
# Sets new DNA output file path
DNA_NEW = f"{OUTPUT_DIR}/Ada_with_lods_1_and_3.dna"
# Sets lods to extract
LODS = [1, 3]
def save_dna(reader: dnacalib.DNACalibDNAReader, created_dna_path: str):
# Saves the dna
stream = dna.FileStream(created_dna_path, dna.FileStream.AccessMode_Write, dna.FileStream.OpenMode_Binary)
writer = dna.BinaryStreamWriter(stream)
writer.setFrom(reader)
writer.write()
def run_SetLODsCommand(reader):
calibrated = dnacalib.DNACalibDNAReader(reader)
command = dnacalib.SetLODsCommand()
# Set a list of LODs that will be exported to the new file
command.setLODs(LODS)
# Runs the command that reduces LODs of the DNA
command.run(calibrated)
print("Setting new LODs...")
if calibrated.getLODCount() != 2:
raise RuntimeError("Setting new number of LODs in DNA was unsuccessful!")
print("\nSuccessfully changed number of LODs in DNA.")
print("Saving DNA...")
# Save the newly created DNA
save_dna(calibrated, DNA_NEW)
print("Done.")
def load_dna_calib(dna_path: str):
# Load the DNA
stream = dna.FileStream(dna_path, dna.FileStream.AccessMode_Read, dna.FileStream.OpenMode_Binary)
reader = dna.BinaryStreamReader(stream, dna.DataLayer_All)
reader.read()
return reader
makedirs(OUTPUT_DIR, exist_ok=True)
reader = load_dna_calib(DNA)
run_SetLODsCommand(reader)